Agerup is a settlement in Samsø Municipality, in the region of Central Denmark, Denmark. The nearest city is Aarhus, 40 km to the northwest. Among the landmarks around are Ilse Made kilde (6.8 km), Nils Halses Høj (1.6 km) and Stenstuen (1.8 km). Among the natural features are Dyret (4.4 km) and Lindholm (8.1 km).