Varnutė is a village in Jonava District Municipality, in Kaunas County, Lithuania. Varnutė lies at 79 m above sea level. The nearest city is Jonava, 2.5 km to the southeast. Among the landmarks around are Ninth Fort (30 km), M. K. Čiurlionis National Art Museum (31 km) and Pažaislis Monastery (28 km). Among the natural features are Vainiai poplar (4.4 km).