Varpėnai is a village in Jonava District Municipality, in Kaunas County, Lithuania. Varpėnai lies at 91 m above sea level. It has 9 inhabitants. The nearest city is Jonava, 5.0 km to the southeast. Among the landmarks around are Ninth Fort (31 km), M. K. Čiurlionis National Art Museum (33 km) and Open-Air Museum of Lithuania (28 km). Among the natural features are Vainiai poplar (2.2 km).
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